Transcript: Mouse NM_027521.3

Mus musculus Rho GTPase activating protein 45 (Arhgap45), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-02-21
Taxon:
Mus musculus (mouse)
Gene:
Arhgap45 (70719)
Length:
3480
CDS:
55..3057

Additional Resources:

NCBI RefSeq record:
NM_027521.3
NBCI Gene record:
Arhgap45 (70719)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_027521.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000306290 CGAGGTCACCAGGTTCATAAG pLKO_005 1537 CDS 100% 10.800 8.640 N Arhgap45 n/a
2 TRCN0000090709 CGAGTTATTGAGACTCTGATT pLKO.1 2578 CDS 100% 4.950 3.960 N Arhgap45 n/a
3 TRCN0000354119 CGAGTTATTGAGACTCTGATT pLKO_005 2578 CDS 100% 4.950 3.960 N Arhgap45 n/a
4 TRCN0000306291 GTGCGAGAGCAGCAAACTATA pLKO_005 1284 CDS 100% 13.200 9.240 N Arhgap45 n/a
5 TRCN0000090711 CGACATCAGCAACGTCCTAAA pLKO.1 2178 CDS 100% 10.800 7.560 N Arhgap45 n/a
6 TRCN0000090710 CCAAGGTCAAAGCCTTTCATT pLKO.1 257 CDS 100% 5.625 3.938 N Arhgap45 n/a
7 TRCN0000326728 CCAAGGTCAAAGCCTTTCATT pLKO_005 257 CDS 100% 5.625 3.938 N Arhgap45 n/a
8 TRCN0000090712 AGCCTTTCATTATGAATGCAA pLKO.1 267 CDS 100% 3.000 2.100 N Arhgap45 n/a
9 TRCN0000090708 GCCGAGGAACTTCAGGGAGAT pLKO.1 3133 3UTR 100% 1.350 0.945 N Arhgap45 n/a
10 TRCN0000326729 GCCGAGGAACTTCAGGGAGAT pLKO_005 3133 3UTR 100% 1.350 0.945 N Arhgap45 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_027521.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.