Transcript: Mouse NM_028078.3

Mus musculus immunoglobulin superfamily, member 5 (Igsf5), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-07-06
Taxon:
Mus musculus (mouse)
Gene:
Igsf5 (72058)
Length:
1600
CDS:
102..914

Additional Resources:

NCBI RefSeq record:
NM_028078.3
NBCI Gene record:
Igsf5 (72058)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_028078.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000250379 TCACCGGAGCTGATGGTTAAT pLKO_005 1021 3UTR 100% 13.200 18.480 N Igsf5 n/a
2 TRCN0000250376 ACAGCTTCCGGATCCAGTTAT pLKO_005 156 CDS 100% 13.200 9.240 N Igsf5 n/a
3 TRCN0000175534 CCCTGTATTCCAAGAAGTATT pLKO.1 1063 3UTR 100% 13.200 9.240 N Igsf5 n/a
4 TRCN0000193082 CCTGTATTCCAAGAAGTATTT pLKO.1 1064 3UTR 100% 13.200 9.240 N Igsf5 n/a
5 TRCN0000250377 GAAATGTGACTTTAGTGTAAT pLKO_005 895 CDS 100% 13.200 9.240 N Igsf5 n/a
6 TRCN0000250378 GCTTCTCATGTGGACTCTTAA pLKO_005 260 CDS 100% 13.200 9.240 N Igsf5 n/a
7 TRCN0000250375 CGCTTCACCTATGCCAGTTAC pLKO_005 333 CDS 100% 10.800 7.560 N Igsf5 n/a
8 TRCN0000173124 CCTTCCTTATCAGGAACTCAA pLKO.1 806 CDS 100% 0.495 0.297 N Igsf5 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_028078.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.