Transcript: Mouse NM_029005.3

Mus musculus mixed lineage kinase domain-like (Mlkl), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-06-11
Taxon:
Mus musculus (mouse)
Gene:
Mlkl (74568)
Length:
2007
CDS:
385..1779

Additional Resources:

NCBI RefSeq record:
NM_029005.3
NBCI Gene record:
Mlkl (74568)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_029005.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000360818 AGATCCAGTTCAACGATATAT pLKO_005 1453 CDS 100% 15.000 21.000 N Mlkl n/a
2 TRCN0000360819 AGCCGGAGGCTACCAAGTAAA pLKO_005 1362 CDS 100% 13.200 18.480 N Mlkl n/a
3 TRCN0000022602 CGGACAGCAAAGAGCACTAAA pLKO.1 1426 CDS 100% 13.200 18.480 N Mlkl n/a
4 TRCN0000022603 CATTGGAATACCGTTTCAGAT pLKO.1 739 CDS 100% 4.950 6.930 N Mlkl n/a
5 TRCN0000003225 GCGTATATTTGGGATTTGCAT pLKO.1 1140 CDS 100% 3.000 4.200 N MLKL n/a
6 TRCN0000360745 TCCCAACATCTTGCGTATATT pLKO_005 1128 CDS 100% 15.000 10.500 N Mlkl n/a
7 TRCN0000022600 CCTGAAGCAATGCTCACTAAA pLKO.1 879 CDS 100% 13.200 9.240 N Mlkl n/a
8 TRCN0000022599 GCAGGATTTGAGTTAAGCAAA pLKO.1 1387 CDS 100% 4.950 3.465 N Mlkl n/a
9 TRCN0000022601 CCCTGAGTTCTCCATTGTCAT pLKO.1 1179 CDS 100% 4.950 2.970 N Mlkl n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_029005.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.