Transcript: Mouse NM_029253.1

Mus musculus activating transcription factor 7 interacting protein 2 (Atf7ip2), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-05-21
Taxon:
Mus musculus (mouse)
Gene:
Atf7ip2 (75329)
Length:
1047
CDS:
131..1033

Additional Resources:

NCBI RefSeq record:
NM_029253.1
NBCI Gene record:
Atf7ip2 (75329)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_029253.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000096284 CCAAACACATTACCCAGTAAT pLKO.1 596 CDS 100% 13.200 18.480 N Atf7ip2 n/a
2 TRCN0000096285 CCATCAACTTGTGTTGAGTTT pLKO.1 758 CDS 100% 0.495 0.396 N Atf7ip2 n/a
3 TRCN0000096287 GCCATCAACTTGTGTTGAGTT pLKO.1 757 CDS 100% 0.495 0.396 N Atf7ip2 n/a
4 TRCN0000096288 CAGCACTGCTAGAACAGGTTA pLKO.1 378 CDS 100% 4.950 3.465 N Atf7ip2 n/a
5 TRCN0000096286 CCGTCCAACTACAGCATAGAA pLKO.1 974 CDS 100% 5.625 7.875 N Atf7ip2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_029253.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.