Transcript: Mouse NM_029360.3

Mus musculus transmembrane 4 superfamily member 5 (Tm4sf5), mRNA.

Source:
NCBI, updated 2017-06-26
Taxon:
Mus musculus (mouse)
Gene:
Tm4sf5 (75604)
Length:
981
CDS:
58..648

Additional Resources:

NCBI RefSeq record:
NM_029360.3
NBCI Gene record:
Tm4sf5 (75604)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_029360.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000173972 GAAGGCGCTTACTTGCGAAAT pLKO.1 448 CDS 100% 10.800 15.120 N Tm4sf5 n/a
2 TRCN0000193248 CCAAATGCTTAATAGACAACA pLKO.1 401 CDS 100% 4.950 6.930 N Tm4sf5 n/a
3 TRCN0000176301 CGAATTGGACCCAAATGCTTA pLKO.1 391 CDS 100% 4.950 3.465 N Tm4sf5 n/a
4 TRCN0000173920 GAATGCGACCTTTGGTGTGTT pLKO.1 588 CDS 100% 4.950 3.465 N Tm4sf5 n/a
5 TRCN0000194626 GTCGCATCAAGTCTGGAACTT pLKO.1 544 CDS 100% 4.950 3.465 N Tm4sf5 n/a
6 TRCN0000176055 GTTCTGGTTTAGCCTTTGGAA pLKO.1 796 3UTR 100% 3.000 2.100 N Tm4sf5 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_029360.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.