Transcript: Mouse NM_029761.4

Mus musculus docking protein 5 (Dok5), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Dok5 (76829)
Length:
1774
CDS:
317..1237

Additional Resources:

NCBI RefSeq record:
NM_029761.4
NBCI Gene record:
Dok5 (76829)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_029761.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000447487 AGCAGACGCCTAGGGATTTAT pLKO_005 368 CDS 100% 15.000 21.000 N Dok5 n/a
2 TRCN0000191826 GCAGATTACATATGAGTACAT pLKO.1 787 CDS 100% 0.000 0.000 N Dok5 n/a
3 TRCN0000200919 CCACAAGGTTACAGAACTCAA pLKO.1 484 CDS 100% 4.950 3.960 N Dok5 n/a
4 TRCN0000437266 CCTCGGAGAGCCTGATTTATT pLKO_005 676 CDS 100% 15.000 10.500 N Dok5 n/a
5 TRCN0000414373 GCGAATGTGCCTTGCAGATTA pLKO_005 774 CDS 100% 13.200 9.240 N DOK5 n/a
6 TRCN0000423238 TCCAGAATCCCAGAGTTAAAC pLKO_005 822 CDS 100% 13.200 9.240 N Dok5 n/a
7 TRCN0000190547 GCAGACGAATGGTGCAAAGTT pLKO.1 614 CDS 100% 5.625 3.938 N Dok5 n/a
8 TRCN0000144662 GTATTTGATGCCATCTCCTAA pLKO.1 739 CDS 100% 4.950 3.465 N DOK5 n/a
9 TRCN0000191393 CCATCTCCTAACTTAGATGTA pLKO.1 749 CDS 100% 0.495 0.347 N Dok5 n/a
10 TRCN0000143811 GCCATCTCCTAACTTAGATGT pLKO.1 748 CDS 100% 0.495 0.347 N DOK5 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_029761.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.