Transcript: Mouse NM_029912.2

Mus musculus transmembrane protein 116 (Tmem116), transcript variant 3, mRNA.

Source:
NCBI, updated 2015-02-15
Taxon:
Mus musculus (mouse)
Gene:
Tmem116 (77462)
Length:
1297
CDS:
441..1070

Additional Resources:

NCBI RefSeq record:
NM_029912.2
NBCI Gene record:
Tmem116 (77462)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_029912.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000200879 GAATTTATAGTAGAAGCCCAA pLKO.1 997 CDS 100% 2.160 1.728 N Tmem116 n/a
2 TRCN0000201608 CAGTGCAAGTTCCAGCAGATA pLKO.1 918 CDS 100% 4.950 3.465 N Tmem116 n/a
3 TRCN0000191738 GAGTGAATGTTTCACATGAGT pLKO.1 1094 3UTR 100% 3.000 2.100 N Tmem116 n/a
4 TRCN0000192293 CTTCCACCAATACATCTGTCT pLKO.1 553 CDS 100% 2.640 1.320 Y Tmem116 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_029912.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.