Transcript: Human NM_031993.1

Homo sapiens protocadherin gamma subfamily A, 1 (PCDHGA1), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-08-04
Taxon:
Homo sapiens (human)
Gene:
PCDHGA1 (56114)
Length:
2472
CDS:
1..2472

Additional Resources:

NCBI RefSeq record:
NM_031993.1
NBCI Gene record:
PCDHGA1 (56114)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_031993.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000053887 CCCAGTCTTTACTTGAAGACA pLKO.1 2381 CDS 100% 0.300 0.420 N PCDHGA1 n/a
2 TRCN0000053883 GCCCAAATATTTCGTTTAGAT pLKO.1 865 CDS 100% 5.625 4.500 N PCDHGA1 n/a
3 TRCN0000053884 CCTGGAAATTTACCCTTTAAA pLKO.1 1159 CDS 100% 15.000 10.500 N PCDHGA1 n/a
4 TRCN0000053885 CAAATCACTTACTCCCTAATA pLKO.1 1456 CDS 100% 13.200 9.240 N PCDHGA1 n/a
5 TRCN0000053886 GAATCCTAGAAGTGGCAGCTT pLKO.1 231 CDS 100% 2.640 1.848 N PCDHGA1 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_031993.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.