Transcript: Human NM_032053.3

Homo sapiens protocadherin gamma subfamily A, 4 (PCDHGA4), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-08-08
Taxon:
Homo sapiens (human)
Gene:
PCDHGA4 (56111)
Length:
2713
CDS:
88..2643

Additional Resources:

NCBI RefSeq record:
NM_032053.3
NBCI Gene record:
PCDHGA4 (56111)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_032053.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000429740 GCGGGTAGAGGTGGAAATAAT pLKO_005 531 CDS 100% 15.000 21.000 N PCDHGA4 n/a
2 TRCN0000053698 GCCAGGATTCTCATAATACTT pLKO.1 856 CDS 100% 5.625 7.875 N PCDHGA4 n/a
3 TRCN0000053699 CGGGTACAGTAATTGCACTTT pLKO.1 1265 CDS 100% 4.950 6.930 N PCDHGA4 n/a
4 TRCN0000053700 CCAGCTCAACTCAAACGGTTA pLKO.1 690 CDS 100% 4.050 5.670 N PCDHGA4 n/a
5 TRCN0000435803 GGCCTAGTCACATGTTCTATT pLKO_005 1318 CDS 100% 13.200 10.560 N PCDHGA4 n/a
6 TRCN0000053701 GCTTCCTACTCTGCTTACATT pLKO.1 1543 CDS 100% 5.625 3.938 N PCDHGA4 n/a
7 TRCN0000053702 CAGATTCTCTACTCGGTGTTT pLKO.1 268 CDS 100% 4.950 3.465 N PCDHGA4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_032053.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.