Transcript: Human NM_032242.3

Homo sapiens plexin A1 (PLXNA1), mRNA.

Source:
NCBI, updated 2019-09-24
Taxon:
Homo sapiens (human)
Gene:
PLXNA1 (5361)
Length:
9071
CDS:
1..5691

Additional Resources:

NCBI RefSeq record:
NM_032242.3
NBCI Gene record:
PLXNA1 (5361)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_032242.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000078735 GCTAACTAACTGGTTCACCTT pLKO.1 4320 CDS 100% 2.640 3.696 N PLXNA1 n/a
2 TRCN0000061465 GCGCAAGGATCAAGCCGACTA pLKO.1 8166 3UTR 100% 1.350 1.890 N PLXNA1 n/a
3 TRCN0000061466 GCTCCTAACTGTGCAGCACCT pLKO.1 8291 3UTR 100% 0.720 1.008 N PLXNA1 n/a
4 TRCN0000078737 CGCAGTGAACCGCATCTATAA pLKO.1 198 CDS 100% 13.200 10.560 N PLXNA1 n/a
5 TRCN0000381132 GCGCAGTGAACCGCATCTATA pLKO_005 197 CDS 100% 13.200 9.240 N PLXNA1 n/a
6 TRCN0000078736 CCACCAAGATTGACAACGATT pLKO.1 4721 CDS 100% 4.950 3.465 N PLXNA1 n/a
7 TRCN0000061467 GCAAGCACTTTAGCAGTATCT pLKO.1 8137 3UTR 100% 4.950 3.465 N PLXNA1 n/a
8 TRCN0000078734 GCACTTCTTCACGTCCAAGAT pLKO.1 825 CDS 100% 4.950 3.465 N PLXNA1 n/a
9 TRCN0000061463 GCACTTTAGCAGTATCTGTTT pLKO.1 8141 3UTR 100% 4.950 3.465 N PLXNA1 n/a
10 TRCN0000078733 GCCCACAATTAGCTGTCCTTT pLKO.1 8829 3UTR 100% 4.950 3.465 N PLXNA1 n/a
11 TRCN0000061464 GCCGACTACCTGTGCTGTCTA pLKO.1 8179 3UTR 100% 1.650 1.155 N PLXNA1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_032242.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.