Transcript: Human NM_032876.6

Homo sapiens ajuba LIM protein (AJUBA), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-09-16
Taxon:
Homo sapiens (human)
Gene:
AJUBA (84962)
Length:
4168
CDS:
286..1902

Additional Resources:

NCBI RefSeq record:
NM_032876.6
NBCI Gene record:
AJUBA (84962)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_032876.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000365047 TGGACCGGGATTATCACTTTG pLKO_005 1739 CDS 100% 10.800 15.120 N AJUBA n/a
2 TRCN0000075550 CACCTGTATCAAGTGCAACAA pLKO.1 1293 CDS 100% 4.950 6.930 N Ajuba n/a
3 TRCN0000074209 ACCTGTATCAAGTGCAACAAA pLKO.1 1294 CDS 100% 5.625 4.500 N AJUBA n/a
4 TRCN0000074211 GCCGCAGAAAGGGTGAATCTA pLKO.1 332 CDS 100% 5.625 4.500 N AJUBA n/a
5 TRCN0000074212 CGGCACCTGTATCAAGTGCAA pLKO.1 1290 CDS 100% 2.640 2.112 N AJUBA n/a
6 TRCN0000370155 GTGTCTGTGGTCACTTGATTT pLKO_005 1496 CDS 100% 13.200 9.240 N AJUBA n/a
7 TRCN0000365046 CCTGTATCAAGTGCAACAAAG pLKO_005 1295 CDS 100% 10.800 7.560 N AJUBA n/a
8 TRCN0000365048 GACTTCTCCAACCAAGTATAC pLKO_005 1615 CDS 100% 10.800 7.560 N AJUBA n/a
9 TRCN0000074210 CTGTGTACTGTGAGGAAGATT pLKO.1 1436 CDS 100% 5.625 3.938 N AJUBA n/a
10 TRCN0000074208 GCTCCTTATCTGTCTGAGAAT pLKO.1 2695 3UTR 100% 4.950 3.465 N AJUBA n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_032876.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.