Transcript: Human NM_052832.4

Homo sapiens solute carrier family 26 member 7 (SLC26A7), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-08-07
Taxon:
Homo sapiens (human)
Gene:
SLC26A7 (115111)
Length:
5237
CDS:
209..2179

Additional Resources:

NCBI RefSeq record:
NM_052832.4
NBCI Gene record:
SLC26A7 (115111)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_052832.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000044109 GCCTCAGCAATATAGTTTCTT pLKO.1 1251 CDS 100% 5.625 7.875 N SLC26A7 n/a
2 TRCN0000431607 GCTAATACAGTTCCGAGATTT pLKO_005 1468 CDS 100% 13.200 9.240 N SLC26A7 n/a
3 TRCN0000416007 TAGAAGTAGTTGGTCATATTC pLKO_005 1059 CDS 100% 13.200 9.240 N SLC26A7 n/a
4 TRCN0000044111 CCTTATAGTCATCTATGCAAT pLKO.1 1378 CDS 100% 4.950 3.465 N SLC26A7 n/a
5 TRCN0000044108 GCACCACATTACAATCTGAAA pLKO.1 320 CDS 100% 4.950 3.465 N SLC26A7 n/a
6 TRCN0000044112 GAGGTTTACATGGACTGTAAA pLKO.1 1982 CDS 100% 1.320 0.924 N SLC26A7 n/a
7 TRCN0000044110 CGACTTTGAAATGCAAAGGAT pLKO.1 622 CDS 100% 0.300 0.210 N SLC26A7 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_052832.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.