Transcript: Human NM_053036.2

Homo sapiens neuropeptide FF receptor 2 (NPFFR2), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-09-23
Taxon:
Homo sapiens (human)
Gene:
NPFFR2 (10886)
Length:
1941
CDS:
290..1552

Additional Resources:

NCBI RefSeq record:
NM_053036.2
NBCI Gene record:
NPFFR2 (10886)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_053036.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000008918 CCTATAACACTGCTGGACAAT pLKO.1 587 CDS 100% 4.950 6.930 N NPFFR2 n/a
2 TRCN0000008917 GCTCACTATCAAGACAGCGTT pLKO.1 751 CDS 100% 2.640 2.112 N NPFFR2 n/a
3 TRCN0000357270 CTAACTCTACTACGCATTATA pLKO_005 1573 3UTR 100% 15.000 10.500 N NPFFR2 n/a
4 TRCN0000357326 CATATTCTGCATGCCTATAAC pLKO_005 574 CDS 100% 13.200 9.240 N NPFFR2 n/a
5 TRCN0000008916 CCTAACTCTACTACGCATTAT pLKO.1 1572 3UTR 100% 13.200 9.240 N NPFFR2 n/a
6 TRCN0000367767 GTCCTAGCCATCACCATTATG pLKO_005 794 CDS 100% 13.200 9.240 N NPFFR2 n/a
7 TRCN0000011661 CCGTGGTTTCCAAGAAGCTTT pLKO.1 1312 CDS 100% 4.950 3.465 N NPFFR2 n/a
8 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 184 5UTR 100% 5.625 2.813 Y KLHL30 n/a
9 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 184 5UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_053036.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.