Transcript: Mouse NM_053150.2

Mus musculus killer cell lectin-like receptor subfamily A, member 20 (Klra20), mRNA.

Source:
NCBI, updated 2014-05-14
Taxon:
Mus musculus (mouse)
Gene:
Klra20 (93967)
Length:
1147
CDS:
54..845

Additional Resources:

NCBI RefSeq record:
NM_053150.2
NBCI Gene record:
Klra20 (93967)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_053150.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000067885 TAATGGATGAACTGCTGAGAA pLKO.1 331 CDS 100% 4.950 3.465 N Klra20 n/a
2 TRCN0000067884 GCAAAGTGACATCAACTTAAT pLKO.1 314 CDS 100% 13.200 7.920 N Klra20 n/a
3 TRCN0000067887 CCTGGTAACTGTTGTATTGTT pLKO.1 224 CDS 100% 5.625 3.375 N Klra20 n/a
4 TRCN0000065643 AGAGAGACAATCTGGAAGATT pLKO.1 970 3UTR 100% 5.625 2.813 Y Klra7 n/a
5 TRCN0000065459 CCCATCTAAACTTGCCTTGAA pLKO.1 698 CDS 100% 4.950 2.475 Y Klra4 n/a
6 TRCN0000067883 CCCTGGAAGCTCATTGTGATA pLKO.1 177 CDS 100% 4.950 2.475 Y Klra20 n/a
7 TRCN0000065756 CCTTCAGACAGTTGCTGGATT pLKO.1 627 CDS 100% 4.950 2.475 Y Klra12 n/a
8 TRCN0000067886 CTAGACAATGATAACTGTGAT pLKO.1 774 CDS 100% 4.950 2.475 Y Klra20 n/a
9 TRCN0000067964 CTTGCCTTGAACACAACGAAA pLKO.1 708 CDS 100% 4.950 2.475 Y Klra18 n/a
10 TRCN0000065561 GATTGGACAAATTCCCTCATT pLKO.1 823 CDS 100% 4.950 2.475 Y Klra15 n/a
11 TRCN0000065646 CCAGGCAATGATCTTCTGGAA pLKO.1 372 CDS 100% 2.640 1.320 Y Klra7 n/a
12 TRCN0000065757 GTACAGTGAAACCAAGACTTT pLKO.1 419 CDS 100% 4.950 2.475 Y Klra12 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_053150.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.