Transcript: Mouse NM_053237.2

Mus musculus vomeronasal 1 receptor 14 (Vmn1r14), mRNA.

Source:
NCBI, updated 2012-08-25
Taxon:
Mus musculus (mouse)
Gene:
Vmn1r14 (113864)
Length:
912
CDS:
1..912

Additional Resources:

NCBI RefSeq record:
NM_053237.2
NBCI Gene record:
Vmn1r14 (113864)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_053237.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000120192 GATCAGTCATAGGAACTCTTT pLKO.1 333 CDS 100% 4.950 3.465 N Vmn1r14 n/a
2 TRCN0000120193 GATTATGTACTGGGTGGACTT pLKO.1 735 CDS 100% 4.050 2.430 N Vmn1r14 n/a
3 TRCN0000120194 TGTTCCTTGCTGGAGAGAATT pLKO.1 176 CDS 100% 0.000 0.000 N Vmn1r14 n/a
4 TRCN0000250950 ACTTGGAGTCCTAGCCAATAT pLKO_005 60 CDS 100% 13.200 6.600 Y Vmn1r9 n/a
5 TRCN0000203328 CAACTGACCTTTGTTCACATA pLKO.1 151 CDS 100% 4.950 2.475 Y Vmn1r9 n/a
6 TRCN0000120196 CATGCTGACTACAAGCACATA pLKO.1 591 CDS 100% 4.950 2.475 Y Vmn1r14 n/a
7 TRCN0000125502 CTGACCTTTGTTCACATAATA pLKO.1 154 CDS 100% 15.000 7.500 Y Vmn1r16 n/a
8 TRCN0000250949 TGACCTTTGTTCACATAATAA pLKO_005 155 CDS 100% 15.000 7.500 Y Vmn1r9 n/a
9 TRCN0000198622 CACTAAATCCTGCTCACTCTT pLKO.1 498 CDS 100% 4.950 2.475 Y Vmn1r19 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_053237.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.