Transcript: Mouse NM_053247.4

Mus musculus lymphatic vessel endothelial hyaluronan receptor 1 (Lyve1), mRNA.

Source:
NCBI, updated 2017-06-18
Taxon:
Mus musculus (mouse)
Gene:
Lyve1 (114332)
Length:
2607
CDS:
86..1042

Additional Resources:

NCBI RefSeq record:
NM_053247.4
NBCI Gene record:
Lyve1 (114332)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_053247.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000099608 CAACGCTAATGAAGAATCAAA pLKO.1 946 CDS 100% 5.625 7.875 N Lyve1 n/a
2 TRCN0000099609 CGCTAATGAAGAATCAAAGAA pLKO.1 949 CDS 100% 5.625 3.938 N Lyve1 n/a
3 TRCN0000099605 GCTGAGAATAATCCATTCATT pLKO.1 2392 3UTR 100% 5.625 3.938 N Lyve1 n/a
4 TRCN0000099607 CCACAGATGAATTTCACAGAA pLKO.1 230 CDS 100% 4.950 3.465 N Lyve1 n/a
5 TRCN0000099606 CGGAAGTTTATACAGAACCTA pLKO.1 681 CDS 100% 3.000 2.100 N Lyve1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_053247.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.