Transcript: Human NM_080473.5

Homo sapiens GATA binding protein 5 (GATA5), mRNA.

Source:
NCBI, updated 2019-08-22
Taxon:
Homo sapiens (human)
Gene:
GATA5 (140628)
Length:
2620
CDS:
88..1281

Additional Resources:

NCBI RefSeq record:
NM_080473.5
NBCI Gene record:
GATA5 (140628)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_080473.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000017100 GAAGCCAAAGACCATCGCCAA pLKO.1 963 CDS 100% 2.160 3.024 N GATA5 n/a
2 TRCN0000017099 GCCGCTCGTTCGGCCTCAGAA pLKO.1 759 CDS 100% 0.000 0.000 N GATA5 n/a
3 TRCN0000433654 TCATTGCCCACATGGATAGAC pLKO_005 1777 3UTR 100% 4.950 3.960 N GATA5 n/a
4 TRCN0000431556 ACCACCACCACCAACTTGAAT pLKO_005 1585 3UTR 100% 5.625 3.938 N GATA5 n/a
5 TRCN0000437648 CTCAGGATCCACAAGGAATGC pLKO_005 996 CDS 100% 4.050 2.835 N GATA5 n/a
6 TRCN0000017101 CGGCCACTTGGAGTTCAAGTT pLKO.1 1158 CDS 100% 0.495 0.347 N GATA5 n/a
7 TRCN0000017102 GCCCACCTTCGTGTCCGACTT pLKO.1 600 CDS 100% 0.000 0.000 N GATA5 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_080473.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.