Transcript: Human NM_080591.3

Homo sapiens prostaglandin-endoperoxide synthase 1 (PTGS1), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-09-28
Taxon:
Homo sapiens (human)
Gene:
PTGS1 (5742)
Length:
4909
CDS:
62..1750

Additional Resources:

NCBI RefSeq record:
NM_080591.3
NBCI Gene record:
PTGS1 (5742)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_080591.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000229882 GTGAGCTATTACACTCGTATT pLKO_005 491 CDS 100% 10.800 15.120 N PTGS1 n/a
2 TRCN0000045523 CGTGAGCTATTACACTCGTAT pLKO.1 490 CDS 100% 4.950 6.930 N PTGS1 n/a
3 TRCN0000229883 GGTAGACCTCGGCCACATTTA pLKO_005 739 CDS 100% 13.200 10.560 N PTGS1 n/a
4 TRCN0000218706 GATGGTCTTAAATGCTCATTT pLKO_005 1821 3UTR 100% 13.200 9.240 N PTGS1 n/a
5 TRCN0000229884 ACAATCTGGAGCGTCAGTATC pLKO_005 765 CDS 100% 10.800 7.560 N PTGS1 n/a
6 TRCN0000045524 CGCAAGAGGTTTGGCATGAAA pLKO.1 1346 CDS 100% 5.625 3.938 N PTGS1 n/a
7 TRCN0000045525 GCCAGTGAATCCCTGTTGTTA pLKO.1 151 CDS 100% 5.625 3.938 N PTGS1 n/a
8 TRCN0000045527 CATGGAGTTCAACCATCTCTA pLKO.1 1192 CDS 100% 4.950 3.465 N PTGS1 n/a
9 TRCN0000045526 CGGCCACATTTATGGAGACAA pLKO.1 748 CDS 100% 4.950 3.465 N PTGS1 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_080591.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.