Transcript: Mouse NM_130869.3

Mus musculus NOBOX oogenesis homeobox (Nobox), mRNA.

Source:
NCBI, updated 2017-05-28
Taxon:
Mus musculus (mouse)
Gene:
Nobox (18291)
Length:
1893
CDS:
29..1612

Additional Resources:

NCBI RefSeq record:
NM_130869.3
NBCI Gene record:
Nobox (18291)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_130869.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000418815 ACCACCCACCTACTCAAATTT pLKO_005 1006 CDS 100% 15.000 10.500 N Nobox n/a
2 TRCN0000425930 GAAGAACTGGAGAGGATATTT pLKO_005 473 CDS 100% 15.000 10.500 N Nobox n/a
3 TRCN0000426792 GAGACTCATCACAGGATTATT pLKO_005 1227 CDS 100% 15.000 10.500 N Nobox n/a
4 TRCN0000070682 CCTAGAAGTGACCTGTCAATT pLKO.1 412 CDS 100% 13.200 9.240 N Nobox n/a
5 TRCN0000431205 GAAGACCTCTGAGGAGTTAAT pLKO_005 205 CDS 100% 13.200 9.240 N Nobox n/a
6 TRCN0000070679 CCAAGCTCAATGCCATTTCTA pLKO.1 1163 CDS 100% 5.625 3.938 N Nobox n/a
7 TRCN0000070678 CCACCAGAAGACTCTCTGTTT pLKO.1 1184 CDS 100% 4.950 3.465 N Nobox n/a
8 TRCN0000070681 GAATCGCTGAAGCCATCCATT pLKO.1 323 CDS 100% 4.950 3.465 N Nobox n/a
9 TRCN0000070680 GCAGTCTTCATTAGGCCTCAA pLKO.1 1444 CDS 100% 4.050 2.835 N Nobox n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_130869.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.