Transcript: Mouse NM_130889.3

Mus musculus acidic (leucine-rich) nuclear phosphoprotein 32 family, member B (Anp32b), mRNA.

Source:
NCBI, updated 2017-06-10
Taxon:
Mus musculus (mouse)
Gene:
Anp32b (67628)
Length:
1702
CDS:
371..1189

Additional Resources:

NCBI RefSeq record:
NM_130889.3
NBCI Gene record:
Anp32b (67628)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_130889.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000077173 CTCATGGATTTGGTAGCTGTT pLKO.1 1240 3UTR 100% 4.050 3.240 N Anp32b n/a
2 TRCN0000333884 CTCATGGATTTGGTAGCTGTT pLKO_005 1240 3UTR 100% 4.050 3.240 N Anp32b n/a
3 TRCN0000077174 CCGAAGCTACCTAAGTTGAAA pLKO.1 551 CDS 100% 5.625 3.938 N Anp32b n/a
4 TRCN0000333883 CCGAAGCTACCTAAGTTGAAA pLKO_005 551 CDS 100% 5.625 3.938 N Anp32b n/a
5 TRCN0000077177 CTTGTCTTGGACAATTGCAAA pLKO.1 434 CDS 100% 4.950 3.465 N Anp32b n/a
6 TRCN0000333882 CTTGTCTTGGACAATTGCAAA pLKO_005 434 CDS 100% 4.950 3.465 N Anp32b n/a
7 TRCN0000077176 GAAGAAGAATTTGGACATGAT pLKO.1 1052 CDS 100% 4.950 3.465 N Anp32b n/a
8 TRCN0000348085 ATGTGGAGGTGGATAGTGTAG pLKO_005 846 CDS 100% 4.050 2.835 N Anp32b n/a
9 TRCN0000077175 CTGTCCTATCTGGATGGCTAT pLKO.1 794 CDS 100% 4.050 2.835 N Anp32b n/a
10 TRCN0000077928 CCACCCAAAGAGCCAAAGAAT pLKO.1 1298 3UTR 100% 5.625 3.375 N ANP32B n/a
11 TRCN0000307043 CCACCCAAAGAGCCAAAGAAT pLKO_005 1298 3UTR 100% 5.625 3.375 N ANP32B n/a
12 TRCN0000152515 GAAGAGGAAGAGGAAGATGAT pLKO.1 938 CDS 100% 4.950 2.475 Y NPM2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_130889.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.