Transcript: Human NM_133266.5

Homo sapiens SH3 and multiple ankyrin repeat domains 2 (SHANK2), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-09-30
Taxon:
Homo sapiens (human)
Gene:
SHANK2 (22941)
Length:
8875
CDS:
75..3860

Additional Resources:

NCBI RefSeq record:
NM_133266.5
NBCI Gene record:
SHANK2 (22941)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_133266.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000040281 CGACCTCAACAAACCTCTTTA pLKO.1 2033 CDS 100% 13.200 18.480 N SHANK2 n/a
2 TRCN0000265363 GTACGATGCGAAGGCAGAAAT pLKO_005 835 CDS 100% 13.200 18.480 N Shank2 n/a
3 TRCN0000040278 GCCAATCTCAAATAAGCCTTT pLKO.1 3623 CDS 100% 4.050 5.670 N SHANK2 n/a
4 TRCN0000428310 GCCCAAAGGCAAACGTTATTA pLKO_005 3163 CDS 100% 15.000 12.000 N SHANK2 n/a
5 TRCN0000428463 TCGCAGACTGCTCTTGTTATA pLKO_005 3879 3UTR 100% 13.200 10.560 N SHANK2 n/a
6 TRCN0000421177 AGAGTCTACGGGACGATTAAG pLKO_005 1053 CDS 100% 13.200 9.240 N SHANK2 n/a
7 TRCN0000040282 CCGCTCTCTCAGATGTCTTTA pLKO.1 3514 CDS 100% 13.200 9.240 N SHANK2 n/a
8 TRCN0000229602 GGACTTCTTGATTGAGGTTAA pLKO_005 356 CDS 100% 10.800 7.560 N Shank2 n/a
9 TRCN0000446092 GGGAATCACCTGGTCCTTAAG pLKO_005 435 CDS 100% 10.800 7.560 N SHANK2 n/a
10 TRCN0000040279 GCAAGCATTTATGGTTGACAA pLKO.1 2918 CDS 100% 4.950 3.465 N SHANK2 n/a
11 TRCN0000040280 GCAGAATCTTTCTATCAGGAA pLKO.1 865 CDS 100% 2.640 1.848 N SHANK2 n/a
12 TRCN0000229603 TCCGGAAGAAGAAGGATAAAC pLKO_005 604 CDS 100% 13.200 7.920 N Shank2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_133266.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.