Transcript: Mouse NM_133754.5

Mus musculus filamin binding LIM protein 1 (Fblim1), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Fblim1 (74202)
Length:
3109
CDS:
196..1323

Additional Resources:

NCBI RefSeq record:
NM_133754.5
NBCI Gene record:
Fblim1 (74202)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_133754.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000295097 GTGCTGCCCTGACATGTTTAT pLKO_005 1573 3UTR 100% 13.200 9.240 N Fblim1 n/a
2 TRCN0000295098 TGTGCAGCATCTGCGAGAATC pLKO_005 1106 CDS 100% 10.800 7.560 N Fblim1 n/a
3 TRCN0000295099 CCATCAAAGGGATCGTCTGTC pLKO_005 628 CDS 100% 4.050 2.835 N Fblim1 n/a
4 TRCN0000098759 CAGAGATTCTACCAGAAGGAT pLKO.1 862 CDS 100% 3.000 2.100 N Fblim1 n/a
5 TRCN0000287680 CAGAGATTCTACCAGAAGGAT pLKO_005 862 CDS 100% 3.000 2.100 N Fblim1 n/a
6 TRCN0000098756 GCTGATTTCTACAGGAAATTT pLKO.1 1078 CDS 100% 1.500 1.050 N Fblim1 n/a
7 TRCN0000287679 GCTGATTTCTACAGGAAATTT pLKO_005 1078 CDS 100% 1.500 1.050 N Fblim1 n/a
8 TRCN0000098757 TGGCTGATTTCTACAGGAAAT pLKO.1 1076 CDS 100% 1.080 0.756 N Fblim1 n/a
9 TRCN0000098758 GCCTCCTGTCTTACCAGGGAA pLKO.1 540 CDS 100% 0.880 0.528 N Fblim1 n/a
10 TRCN0000098755 CCAGAGTTCATTTCCCAGCAT pLKO.1 2002 3UTR 100% 2.640 1.320 Y Fblim1 n/a
11 TRCN0000166364 CACACACACACACACACACAA pLKO.1 2668 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_133754.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.