Transcript: Mouse NM_133789.3

Mus musculus striatin, calmodulin binding protein 4 (Strn4), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Strn4 (97387)
Length:
3562
CDS:
465..2747

Additional Resources:

NCBI RefSeq record:
NM_133789.3
NBCI Gene record:
Strn4 (97387)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_133789.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000075631 ACGACTGTTCTCTGCGTTTAT pLKO.1 2581 CDS 100% 13.200 18.480 N Strn4 n/a
2 TRCN0000327392 ACGACTGTTCTCTGCGTTTAT pLKO_005 2581 CDS 100% 13.200 18.480 N Strn4 n/a
3 TRCN0000075630 CCTGGACAATCGAACAGGTAA pLKO.1 2474 CDS 100% 4.950 3.960 N Strn4 n/a
4 TRCN0000327470 CCTGGACAATCGAACAGGTAA pLKO_005 2474 CDS 100% 4.950 3.960 N Strn4 n/a
5 TRCN0000075629 CCTCCTTTCGTTCTGGTGATA pLKO.1 2308 CDS 100% 4.950 3.465 N Strn4 n/a
6 TRCN0000327469 CCTCCTTTCGTTCTGGTGATA pLKO_005 2308 CDS 100% 4.950 3.465 N Strn4 n/a
7 TRCN0000075632 GCGTGTTCTTGATGTCAGGAA pLKO.1 2557 CDS 100% 2.640 1.848 N Strn4 n/a
8 TRCN0000075628 CCACGTTATCACTGTGTGATA pLKO.1 3343 3UTR 100% 0.495 0.347 N Strn4 n/a
9 TRCN0000327468 CCACGTTATCACTGTGTGATA pLKO_005 3343 3UTR 100% 0.495 0.347 N Strn4 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_133789.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.