Transcript: Mouse NM_133847.3

Mus musculus transmembrane 9 superfamily protein member 4 (Tm9sf4), mRNA.

Source:
NCBI, updated 2017-05-28
Taxon:
Mus musculus (mouse)
Gene:
Tm9sf4 (99237)
Length:
3895
CDS:
257..2188

Additional Resources:

NCBI RefSeq record:
NM_133847.3
NBCI Gene record:
Tm9sf4 (99237)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_133847.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000060008 CGGTGGTACATGAACCGATTT pLKO.1 1739 CDS 100% 10.800 15.120 N TM9SF4 n/a
2 TRCN0000311220 CGGTGGTACATGAACCGATTT pLKO_005 1739 CDS 100% 10.800 15.120 N Tm9sf4 n/a
3 TRCN0000126160 CGCCAATCAATTTCCACCAAA pLKO.1 345 CDS 100% 4.950 6.930 N Tm9sf4 n/a
4 TRCN0000126159 CCGCACTTTGTAAAGGGTGAT pLKO.1 3047 3UTR 100% 4.050 5.670 N Tm9sf4 n/a
5 TRCN0000126161 CGAGCGAATCACAGAAGAATA pLKO.1 622 CDS 100% 13.200 10.560 N Tm9sf4 n/a
6 TRCN0000308430 CGAGCGAATCACAGAAGAATA pLKO_005 622 CDS 100% 13.200 10.560 N Tm9sf4 n/a
7 TRCN0000304994 CCAGTCTGTAGGGATACATTT pLKO_005 2378 3UTR 100% 13.200 9.240 N Tm9sf4 n/a
8 TRCN0000305023 TGTCTACTTGGGCTACTATTT pLKO_005 1648 CDS 100% 13.200 9.240 N Tm9sf4 n/a
9 TRCN0000305024 CCTTACGAGTACTACTCATTG pLKO_005 419 CDS 100% 10.800 7.560 N Tm9sf4 n/a
10 TRCN0000126163 GCCAACTACAACAAGGAGGAT pLKO.1 1187 CDS 100% 2.640 1.848 N Tm9sf4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_133847.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.