Transcript: Human NM_138270.4

Homo sapiens ATRX chromatin remodeler (ATRX), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-09-15
Taxon:
Homo sapiens (human)
Gene:
ATRX (546)
Length:
11053
CDS:
216..7580

Additional Resources:

NCBI RefSeq record:
NM_138270.4
NBCI Gene record:
ATRX (546)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_138270.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000013592 CCGGTGGTGAACATAAGAAAT pLKO.1 1567 CDS 100% 13.200 18.480 N ATRX n/a
2 TRCN0000013590 CGACAGAAACTAACCCTGTAA pLKO.1 2101 CDS 100% 4.950 6.930 N ATRX n/a
3 TRCN0000013591 CGACGTATTAAGGTTCAAGAA pLKO.1 4377 CDS 100% 4.950 6.930 N ATRX n/a
4 TRCN0000352788 CGATCAAGGAGGAGGATTATT pLKO_005 5316 CDS 100% 15.000 10.500 N ATRX n/a
5 TRCN0000342811 GATAATCCTAAGCCTAATAAA pLKO_005 2226 CDS 100% 15.000 10.500 N ATRX n/a
6 TRCN0000342812 TCAACCTCTTGAGGATATAAT pLKO_005 7142 CDS 100% 15.000 10.500 N ATRX n/a
7 TRCN0000342874 CTTCGAAACATTGACTATTAC pLKO_005 6333 CDS 100% 13.200 9.240 N ATRX n/a
8 TRCN0000081908 CCTTCTAACTACCAGCAGATT pLKO.1 7443 CDS 100% 4.950 3.465 N Atrx n/a
9 TRCN0000302006 CCTTCTAACTACCAGCAGATT pLKO_005 7443 CDS 100% 4.950 3.465 N Atrx n/a
10 TRCN0000013589 GCAGATTGATATGAGAGGAAT pLKO.1 7457 CDS 100% 4.950 3.465 N ATRX n/a
11 TRCN0000013588 GCCTGCTAAATTCTCCACATT pLKO.1 9819 3UTR 100% 4.950 3.465 N ATRX n/a
12 TRCN0000342876 GAGTTGATTCCTCAAGTTATG pLKO_005 7994 3UTR 100% 10.800 6.480 N ATRX n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_138270.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.