Transcript: Human NM_138617.4

Homo sapiens Rh blood group CcEe antigens (RHCE), transcript variant 4, mRNA.

Source:
NCBI, updated 2019-09-10
Taxon:
Homo sapiens (human)
Gene:
RHCE (6006)
Length:
1265
CDS:
129..932

Additional Resources:

NCBI RefSeq record:
NM_138617.4
NBCI Gene record:
RHCE (6006)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_138617.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000427892 ATACTGTCTGGAACGGCAATG pLKO_005 862 CDS 100% 6.000 8.400 N RHCE n/a
2 TRCN0000433664 CATTAGGATGATGCTATCAAT pLKO_005 1199 3UTR 100% 5.625 3.938 N RHCE n/a
3 TRCN0000060060 GCACCTCATGTGGCTAAATAT pLKO.1 916 CDS 100% 15.000 9.000 N RHCE n/a
4 TRCN0000060062 GCTTGGAGAGATCACCTACAT pLKO.1 824 CDS 100% 4.950 2.970 N RHCE n/a
5 TRCN0000060059 GCTCTCATTCTCCTCTTCTAT pLKO.1 195 CDS 100% 5.625 2.813 Y RHCE n/a
6 TRCN0000082938 CCTGCATTTGTACGTGAGAAA pLKO.1 1049 3UTR 100% 4.950 2.475 Y RHD n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_138617.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.