Transcript: Mouse NM_144550.4

Mus musculus spindle and centriole associated protein 1 (Spice1), mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Spice1 (212514)
Length:
4342
CDS:
107..2689

Additional Resources:

NCBI RefSeq record:
NM_144550.4
NBCI Gene record:
Spice1 (212514)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_144550.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000184333 GTGCCAGTGAAGTGTCTACTA pLKO.1 2241 CDS 100% 4.950 6.930 N Spice1 n/a
2 TRCN0000179908 CGGTACCTTAAAGAGAGTGAA pLKO.1 1253 CDS 100% 0.000 0.000 N Spice1 n/a
3 TRCN0000322527 ATCAACTGTGGACTGATATTC pLKO_005 762 CDS 100% 13.200 10.560 N Spice1 n/a
4 TRCN0000322459 TCAACAAAGCACCTCTAATTC pLKO_005 2866 3UTR 100% 13.200 10.560 N Spice1 n/a
5 TRCN0000350689 CAGTGAAGTGTCTACTAATTT pLKO_005 2245 CDS 100% 15.000 10.500 N Spice1 n/a
6 TRCN0000412433 GAACTGTCCTGTGATAAATAA pLKO_005 1465 CDS 100% 15.000 10.500 N SPICE1 n/a
7 TRCN0000350734 GAGGTTTCTTCACCAACTAAA pLKO_005 718 CDS 100% 13.200 9.240 N Spice1 n/a
8 TRCN0000182938 CCTCAGAACATAGGAAACATA pLKO.1 3728 3UTR 100% 5.625 3.938 N Spice1 n/a
9 TRCN0000184640 CCTGCCTATTGATCCAGACAT pLKO.1 1867 CDS 100% 4.950 3.465 N Spice1 n/a
10 TRCN0000183005 CCTGTATTTATGGAAACAGAA pLKO.1 2805 3UTR 100% 4.950 3.465 N Spice1 n/a
11 TRCN0000322461 TGAGGCAAGAATGGGATAATA pLKO_005 186 CDS 100% 15.000 9.000 N Spice1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_144550.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.