Transcript: Mouse NM_145428.2

Mus musculus dehydrogenase/reductase (SDR family) member 7B (Dhrs7b), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Dhrs7b (216820)
Length:
1553
CDS:
82..1053

Additional Resources:

NCBI RefSeq record:
NM_145428.2
NBCI Gene record:
Dhrs7b (216820)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_145428.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000198546 GCTACATCCATACCAACCTCT pLKO.1 788 CDS 100% 2.640 2.112 N Dhrs7b n/a
2 TRCN0000181732 GACAGACTTTGTGCCATCCAT pLKO.1 942 CDS 100% 3.000 2.100 N Dhrs7b n/a
3 TRCN0000176787 CATTAGTGATACCATAGTGGA pLKO.1 525 CDS 100% 2.640 1.848 N Dhrs7b n/a
4 TRCN0000198683 CCAGGCATTCTTTGACTGTCT pLKO.1 717 CDS 100% 2.640 1.848 N Dhrs7b n/a
5 TRCN0000197964 GAAATAAACTACTTTGGCCCT pLKO.1 565 CDS 100% 0.540 0.378 N Dhrs7b n/a
6 TRCN0000198372 GATGTTCTCCTGACAGACTTT pLKO.1 931 CDS 100% 4.950 2.970 N Dhrs7b n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_145428.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.