Transcript: Mouse NM_146099.3

Mus musculus WW domain binding protein 1 like (Wbp1l), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Wbp1l (226178)
Length:
3898
CDS:
99..1208

Additional Resources:

NCBI RefSeq record:
NM_146099.3
NBCI Gene record:
Wbp1l (226178)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_146099.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000135456 GTGTGGGTACCAACAATCAAA pLKO.1 202 CDS 100% 0.000 0.000 N WBP1L n/a
2 TRCN0000275319 GTGTGGGTACCAACAATCAAA pLKO_005 202 CDS 100% 0.000 0.000 N WBP1L n/a
3 TRCN0000279087 ATGAGCAGGACTCTCCAAATT pLKO_005 1162 CDS 100% 13.200 9.240 N Wbp1l n/a
4 TRCN0000190958 CGGCCACTTTGTCCTCTTATA pLKO.1 1298 3UTR 100% 13.200 9.240 N Wbp1l n/a
5 TRCN0000279085 CGGCCACTTTGTCCTCTTATA pLKO_005 1298 3UTR 100% 13.200 9.240 N Wbp1l n/a
6 TRCN0000297610 TGTGGACCGTCGTCATCATTC pLKO_005 304 CDS 100% 10.800 7.560 N Wbp1l n/a
7 TRCN0000192047 CCACGAGAGAAGCATTAAGTA pLKO.1 1261 3UTR 100% 5.625 3.938 N Wbp1l n/a
8 TRCN0000297606 CCACGAGAGAAGCATTAAGTA pLKO_005 1261 3UTR 100% 5.625 3.938 N Wbp1l n/a
9 TRCN0000200620 CAAAGAGTTTAACACGCTCAT pLKO.1 977 CDS 100% 4.050 2.835 N Wbp1l n/a
10 TRCN0000138822 GCGGCAACATGAAATCAACCT pLKO.1 383 CDS 100% 2.640 1.848 N WBP1L n/a
11 TRCN0000192445 CCTCAAAGAGTTTAACACGCT pLKO.1 974 CDS 100% 0.660 0.462 N Wbp1l n/a
12 TRCN0000297609 CCTCAAAGAGTTTAACACGCT pLKO_005 974 CDS 100% 0.660 0.462 N Wbp1l n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_146099.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.