Transcript: Mouse NM_146139.2

Mus musculus vav 3 oncogene (Vav3), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-05-14
Taxon:
Mus musculus (mouse)
Gene:
Vav3 (57257)
Length:
3061
CDS:
75..938

Additional Resources:

NCBI RefSeq record:
NM_146139.2
NBCI Gene record:
Vav3 (57257)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_146139.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000097125 GAACTTATTAACAGGGTGAAT pLKO.1 447 CDS 100% 4.950 3.960 N Vav3 n/a
2 TRCN0000097124 CCAGCATTTCTCGTCTTAAAT pLKO.1 1416 3UTR 100% 15.000 10.500 N Vav3 n/a
3 TRCN0000097128 GTGTACCTAAACCAGTAGATT pLKO.1 373 CDS 100% 5.625 3.938 N Vav3 n/a
4 TRCN0000047701 CCAGTAGATTATTCTTGCCAA pLKO.1 384 CDS 100% 2.640 1.848 N VAV3 n/a
5 TRCN0000097127 CCATTCTCTCAAAGAAGGGTT pLKO.1 638 CDS 100% 2.640 1.848 N Vav3 n/a
6 TRCN0000097126 CCATCCACATATGTGGAAGAA pLKO.1 909 CDS 100% 0.000 0.000 N Vav3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_146139.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.