Transcript: Mouse NM_146467.1

Mus musculus olfactory receptor 1388 (Olfr1388), mRNA.

Source:
NCBI, updated 2013-04-17
Taxon:
Mus musculus (mouse)
Gene:
Olfr1388 (258459)
Length:
936
CDS:
1..936

Additional Resources:

NCBI RefSeq record:
NM_146467.1
NBCI Gene record:
Olfr1388 (258459)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_146467.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000188547 CCTGGGTTCCTATGCTCATAT pLKO.1 639 CDS 100% 13.200 9.240 N Olfr1388 n/a
2 TRCN0000197298 GCACTTATCCTGGGTTCCTAT pLKO.1 631 CDS 100% 4.950 3.465 N Olfr1388 n/a
3 TRCN0000188505 CGGTACTGAAGGTCAAGTCAA pLKO.1 668 CDS 100% 4.950 2.970 N Olfr1388 n/a
4 TRCN0000189143 GACAGGACCATCAGCTATGAA pLKO.1 265 CDS 100% 5.625 2.813 Y Olfr1388 n/a
5 TRCN0000203225 GAATCACTTCTTCTGTGAGAT pLKO.1 519 CDS 100% 4.950 2.475 Y Olfr10 n/a
6 TRCN0000188202 CTCATCAACCTCCATGGACAA pLKO.1 244 CDS 100% 4.050 2.025 Y Olfr1392 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_146467.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.