Transcript: Mouse NM_147041.2

Mus musculus olfactory receptor 57 (Olfr57), mRNA.

Source:
NCBI, updated 2013-04-17
Taxon:
Mus musculus (mouse)
Gene:
Olfr57 (18357)
Length:
1080
CDS:
76..1035

Additional Resources:

NCBI RefSeq record:
NM_147041.2
NBCI Gene record:
Olfr57 (18357)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_147041.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000202620 CTGGTAAACATTCACACACAA pLKO.1 322 CDS 100% 4.950 3.465 N Olfr57 n/a
2 TRCN0000186993 CCTCAAATTCAGCCTGTCATA pLKO.1 139 CDS 100% 4.950 2.970 N Olfr57 n/a
3 TRCN0000187162 CACCTCTCAGTTGTCTCCTTA pLKO.1 808 CDS 100% 4.950 2.475 Y Olfr57 n/a
4 TRCN0000185096 CCTGCATTACATGATCATCAT pLKO.1 465 CDS 100% 4.950 2.475 Y Olfr1351 n/a
5 TRCN0000203275 GCTGGATTATAGGTGTTATAA pLKO.1 521 CDS 100% 1.500 0.750 Y Olfr1351 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_147041.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.