Transcript: Human NM_152345.5

Homo sapiens ankyrin repeat domain 13B (ANKRD13B), mRNA.

Source:
NCBI, updated 2019-06-30
Taxon:
Homo sapiens (human)
Gene:
ANKRD13B (124930)
Length:
3550
CDS:
491..2371

Additional Resources:

NCBI RefSeq record:
NM_152345.5
NBCI Gene record:
ANKRD13B (124930)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_152345.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000140379 GACCACCAAGACACAGAAGTT pLKO.1 1573 CDS 100% 4.950 6.435 N ANKRD13B n/a
2 TRCN0000122644 GCACACGGACAGAACATCTTT pLKO.1 1347 CDS 100% 5.625 4.500 N ANKRD13B n/a
3 TRCN0000144569 GCTTCCCAGTTAAGATTGAAA pLKO.1 1731 CDS 100% 5.625 4.500 N ANKRD13B n/a
4 TRCN0000139696 CTAGCCTCTGTGGTTGTACAT pLKO.1 3222 3UTR 100% 4.950 3.960 N ANKRD13B n/a
5 TRCN0000431292 GGTATGAAGCTAAGGTGTATG pLKO_005 1299 CDS 100% 10.800 7.560 N ANKRD13B n/a
6 TRCN0000140218 GCAAGGTCAAAGGCTGTAAGA pLKO.1 1383 CDS 100% 4.950 3.465 N ANKRD13B n/a
7 TRCN0000442740 CCCGATCTTCCACATCCTCAA pLKO_005 1753 CDS 100% 4.050 2.835 N ANKRD13B n/a
8 TRCN0000145395 GAATATCTCCTTTGAGAGGAA pLKO.1 1228 CDS 100% 2.640 1.848 N ANKRD13B n/a
9 TRCN0000143663 CAAAGGCTGTAAGACACCTTT pLKO.1 1390 CDS 100% 0.495 0.347 N ANKRD13B n/a
10 TRCN0000121528 CGGACAGAACATCTTTCAGAA pLKO.1 1352 CDS 100% 4.950 2.970 N ANKRD13B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_152345.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.