Transcript: Mouse NM_153131.3

Mus musculus unc-5 netrin receptor A (Unc5a), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-05-28
Taxon:
Mus musculus (mouse)
Gene:
Unc5a (107448)
Length:
3974
CDS:
231..2927

Additional Resources:

NCBI RefSeq record:
NM_153131.3
NBCI Gene record:
Unc5a (107448)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_153131.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000432661 GGTCCGGATCAACGTATCAAG pLKO_005 539 CDS 100% 4.950 6.930 N Unc5a n/a
2 TRCN0000071921 AGCAAGGCATTGTGCTACCTT pLKO.1 718 CDS 100% 3.000 2.400 N Unc5a n/a
3 TRCN0000440391 CCCAAGTTCCAGCTCTCTAAT pLKO_005 1566 CDS 100% 13.200 9.240 N Unc5a n/a
4 TRCN0000437502 GGACACGAGGTTTGCTGAAAT pLKO_005 2582 CDS 100% 13.200 9.240 N Unc5a n/a
5 TRCN0000071918 GTGGGCCTTATGCAAACATTT pLKO.1 3336 3UTR 100% 13.200 9.240 N Unc5a n/a
6 TRCN0000071920 CAGAGCTTCAACATCAACTTT pLKO.1 2550 CDS 100% 5.625 3.938 N Unc5a n/a
7 TRCN0000071922 CGAACTCTAGCCCAGAAACTT pLKO.1 2730 CDS 100% 5.625 3.938 N Unc5a n/a
8 TRCN0000071919 CGAGTACAACATCCGAGTGTA pLKO.1 2216 CDS 100% 4.950 3.465 N Unc5a n/a
9 TRCN0000428264 GCCGGCTGATGATCCCTAATA pLKO_005 1753 CDS 100% 13.200 10.560 N UNC5A n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_153131.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.