Transcript: Human NM_153221.2

Homo sapiens cartilage intermediate layer protein 2 (CILP2), mRNA.

Source:
NCBI, updated 2019-05-04
Taxon:
Homo sapiens (human)
Gene:
CILP2 (148113)
Length:
4199
CDS:
86..3556

Additional Resources:

NCBI RefSeq record:
NM_153221.2
NBCI Gene record:
CILP2 (148113)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_153221.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000422496 TCTGACTTCTCGTGCGTATTT pLKO_005 3850 3UTR 100% 13.200 18.480 N CILP2 n/a
2 TRCN0000447440 TGGAAAGACGGTCCGTGTACA pLKO_005 192 CDS 100% 4.950 6.930 N CILP2 n/a
3 TRCN0000416645 AGAGCATCCGATGGTAGAAAC pLKO_005 3707 3UTR 100% 10.800 8.640 N CILP2 n/a
4 TRCN0000446877 CAACGGACTCCTTCGGGATTA pLKO_005 3154 CDS 100% 10.800 7.560 N CILP2 n/a
5 TRCN0000445482 GTTCTGGCGTTTGGCACAAAG pLKO_005 3902 3UTR 100% 10.800 7.560 N CILP2 n/a
6 TRCN0000195886 CTGCTTCCTCAAGGTGAAGAT pLKO.1 2899 CDS 100% 4.950 3.465 N CILP2 n/a
7 TRCN0000153588 GAAATACTCCTGGTTCCACAA pLKO.1 1051 CDS 100% 4.050 2.835 N CILP2 n/a
8 TRCN0000152992 GAATGTGACTTTCTGCTGCAA pLKO.1 1006 CDS 100% 2.640 1.848 N CILP2 n/a
9 TRCN0000155794 CAAGTACGAGTACAACGTGGT pLKO.1 2800 CDS 100% 2.160 1.296 N CILP2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_153221.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.