Transcript: Human NM_172232.4

Homo sapiens ATP binding cassette subfamily A member 5 (ABCA5), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-08-22
Taxon:
Homo sapiens (human)
Gene:
ABCA5 (23461)
Length:
8252
CDS:
98..5026

Additional Resources:

NCBI RefSeq record:
NM_172232.4
NBCI Gene record:
ABCA5 (23461)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_172232.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000427287 TCTGATGGGTTTGCATCTATA pLKO_005 1697 CDS 100% 13.200 18.480 N ABCA5 n/a
2 TRCN0000060297 CGACATATTGTATGGAATCTT pLKO.1 2045 CDS 100% 5.625 7.875 N ABCA5 n/a
3 TRCN0000060296 GCCATTGAAGAATATAGCTTT pLKO.1 4877 CDS 100% 4.950 6.930 N ABCA5 n/a
4 TRCN0000412893 ATATACTCCAGTGACTAATAT pLKO_005 337 CDS 100% 15.000 10.500 N ABCA5 n/a
5 TRCN0000060293 GCCATAAGAATTAGTGGTATT pLKO.1 1526 CDS 100% 10.800 7.560 N ABCA5 n/a
6 TRCN0000060294 CCATCCATTATGGTCAGCAAT pLKO.1 3959 CDS 100% 4.950 3.465 N ABCA5 n/a
7 TRCN0000060295 GCATTGTGATATTTCTGCTTT pLKO.1 984 CDS 100% 4.950 3.465 N ABCA5 n/a
8 TRCN0000416047 GGATACACAATTGCAACTATT pLKO_005 3572 CDS 100% 13.200 7.920 N ABCA5 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_172232.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.