Transcript: Mouse NM_172382.2

Mus musculus lysine (K)-specific demethylase 4A (Kdm4a), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Kdm4a (230674)
Length:
3376
CDS:
196..3297

Additional Resources:

NCBI RefSeq record:
NM_172382.2
NBCI Gene record:
Kdm4a (230674)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_172382.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000103526 CGAACATCCTACGACGATATT pLKO.1 361 CDS 100% 13.200 18.480 N Kdm4a n/a
2 TRCN0000103527 CCGCGATACAGTGAATTTGAA pLKO.1 520 CDS 100% 5.625 7.875 N Kdm4a n/a
3 TRCN0000103525 CGCTTCAAACTGAAGTGTGTT pLKO.1 2668 CDS 100% 4.950 3.960 N Kdm4a n/a
4 TRCN0000103528 AGCACGTTGATGAGTGGAATA pLKO.1 623 CDS 100% 10.800 7.560 N Kdm4a n/a
5 TRCN0000103529 GCTCCACTTCATCTCAGGATT pLKO.1 1733 CDS 100% 4.950 3.465 N Kdm4a n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_172382.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.