Transcript: Mouse NM_172468.2

Mus musculus sorting nexin family member 30 (Snx30), mRNA.

Source:
NCBI, updated 2017-05-14
Taxon:
Mus musculus (mouse)
Gene:
Snx30 (209131)
Length:
7507
CDS:
421..1734

Additional Resources:

NCBI RefSeq record:
NM_172468.2
NBCI Gene record:
Snx30 (209131)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_172468.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000306884 AGTTTGACTTGCCAGAATATT pLKO_005 782 CDS 100% 15.000 21.000 N Snx30 n/a
2 TRCN0000307597 ATGGCGTGGGAGTCCATTATT pLKO_005 1681 CDS 100% 15.000 21.000 N Snx30 n/a
3 TRCN0000093537 CGGTGACAAGGATCTCATCTT pLKO.1 567 CDS 100% 4.950 6.930 N Snx30 n/a
4 TRCN0000093536 GCTCAGGGAATACGTTCTGTA pLKO.1 1398 CDS 100% 4.950 6.930 N Snx30 n/a
5 TRCN0000288315 GCTCAGGGAATACGTTCTGTA pLKO_005 1398 CDS 100% 4.950 6.930 N Snx30 n/a
6 TRCN0000093534 CCTCTTAAATGGAACACTAAA pLKO.1 1955 3UTR 100% 13.200 10.560 N Snx30 n/a
7 TRCN0000288316 CCTCTTAAATGGAACACTAAA pLKO_005 1955 3UTR 100% 13.200 10.560 N Snx30 n/a
8 TRCN0000295595 AGAGCTGACAGATGACATAAC pLKO_005 1359 CDS 100% 10.800 7.560 N Snx30 n/a
9 TRCN0000093535 GCTGACAAGAATATCCAGTAT pLKO.1 1645 CDS 100% 4.950 3.465 N Snx30 n/a
10 TRCN0000093538 GCGGATCATCAAGGAAGAAAT pLKO.1 1212 CDS 100% 13.200 7.920 N Snx30 n/a
11 TRCN0000245754 TCGGTGACAAGGATCTCATTT pLKO_005 566 CDS 100% 13.200 18.480 N SNX30 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_172468.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.