Transcript: Mouse NM_172552.3

Mus musculus thymine DNA glycosylase (Tdg), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-05-21
Taxon:
Mus musculus (mouse)
Gene:
Tdg (21665)
Length:
3218
CDS:
179..1444

Additional Resources:

NCBI RefSeq record:
NM_172552.3
NBCI Gene record:
Tdg (21665)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_172552.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000127244 CCAGCAGGATTTAATGGTATT pLKO.1 3073 3UTR 100% 10.800 7.560 N Tdg n/a
2 TRCN0000432499 ACGTTCAGGAAGTGCAGTATA pLKO_005 1131 CDS 100% 13.200 6.600 Y Tdg n/a
3 TRCN0000412913 AGCAAGGATCTGTCTAGTAAA pLKO_005 809 CDS 100% 13.200 6.600 Y Tdg n/a
4 TRCN0000127247 CCAAGACTCTTCCTGACATTT pLKO.1 573 CDS 100% 13.200 6.600 Y Tdg n/a
5 TRCN0000127246 CGCAAAGAAGATGGCTGTTAA pLKO.1 1180 CDS 100% 13.200 6.600 Y Tdg n/a
6 TRCN0000127245 GCCACGAATAGCGGTGTTTAA pLKO.1 880 CDS 100% 13.200 6.600 Y Tdg n/a
7 TRCN0000127248 GCATTGCTTCAAATGGGCTAA pLKO.1 1281 CDS 100% 4.050 2.025 Y Tdg n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_172552.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.