Transcript: Mouse NM_172931.4

Mus musculus heat shock transcription factor 3 (Hsf3), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-06-10
Taxon:
Mus musculus (mouse)
Gene:
Hsf3 (245525)
Length:
2691
CDS:
133..1068

Additional Resources:

NCBI RefSeq record:
NM_172931.4
NBCI Gene record:
Hsf3 (245525)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_172931.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000096572 GATCATCAGTATTTCCGTATT pLKO.1 568 CDS 100% 10.800 15.120 N Hsf3 n/a
2 TRCN0000096570 GCATTGAATTATGACTCTGAT pLKO.1 1024 CDS 100% 4.950 6.930 N Hsf3 n/a
3 TRCN0000096569 GCCATCTCATATACAATCAAA pLKO.1 1879 3UTR 100% 5.625 3.938 N Hsf3 n/a
4 TRCN0000096573 CTAAGGATATTTCTCTGGAAT pLKO.1 863 CDS 100% 4.950 3.465 N Hsf3 n/a
5 TRCN0000096571 CACAAATGAAACAGGACTATT pLKO.1 377 CDS 100% 13.200 7.920 N Hsf3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_172931.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.