Transcript: Mouse NM_172935.4

Mus musculus amidohydrolase domain containing 2 (Amdhd2), mRNA.

Source:
NCBI, updated 2017-05-28
Taxon:
Mus musculus (mouse)
Gene:
Amdhd2 (245847)
Length:
1463
CDS:
70..1299

Additional Resources:

NCBI RefSeq record:
NM_172935.4
NBCI Gene record:
Amdhd2 (245847)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_172935.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000032761 GATGGGCTAATAGCGTACATT pLKO.1 1015 CDS 100% 5.625 7.875 N Amdhd2 n/a
2 TRCN0000032760 GTGCAGATCAACGGTGGATTT pLKO.1 277 CDS 100% 10.800 8.640 N Amdhd2 n/a
3 TRCN0000046930 TGCATCTTCTATGGGATGATT pLKO.1 850 CDS 100% 5.625 3.938 N AMDHD2 n/a
4 TRCN0000046928 CGGTGGATTTGGTGTTGACTT pLKO.1 288 CDS 100% 4.950 3.465 N AMDHD2 n/a
5 TRCN0000032759 GCCACTTACATCTCTGGTGAA pLKO.1 1246 CDS 100% 4.050 2.835 N Amdhd2 n/a
6 TRCN0000032762 CCACTGCATCTTCTATGGGAT pLKO.1 846 CDS 100% 2.640 1.848 N Amdhd2 n/a
7 TRCN0000032763 GAGGTTTATCACAAGGTCCTT pLKO.1 415 CDS 100% 2.640 1.848 N Amdhd2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_172935.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.