Transcript: Mouse NM_173759.5

Mus musculus RIKEN cDNA A730017C20 gene (A730017C20Rik), transcript variant 3, mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
A730017C20Rik (225583)
Length:
1826
CDS:
6..587

Additional Resources:

NCBI RefSeq record:
NM_173759.5
NBCI Gene record:
A730017C20Rik (225583)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_173759.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000446205 GCATTGTGAACGTCCGCATTG pLKO_005 655 3UTR 100% 6.000 8.400 N A730017C20Rik n/a
2 TRCN0000176035 GAAACGCAACAAGCGATCAAA pLKO.1 485 CDS 100% 5.625 7.875 N A730017C20Rik n/a
3 TRCN0000175448 CGCTTAAGTTAAAGGCGGATA pLKO.1 1098 3UTR 100% 4.050 5.670 N A730017C20Rik n/a
4 TRCN0000442767 TGTGAGCGTCGCTTGTGTTAT pLKO_005 711 3UTR 100% 13.200 10.560 N A730017C20Rik n/a
5 TRCN0000175325 CATTGCTACTCAGCGAATCAA pLKO.1 194 CDS 100% 5.625 3.938 N A730017C20Rik n/a
6 TRCN0000193534 GTCTTCAGTTATGAAGAACAA pLKO.1 266 CDS 100% 0.495 0.347 N A730017C20Rik n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_173759.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.