Transcript: Human NM_175075.4

Homo sapiens testis development related protein (TDRP), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-05-04
Taxon:
Homo sapiens (human)
Gene:
TDRP (157695)
Length:
3436
CDS:
257..814

Additional Resources:

NCBI RefSeq record:
NM_175075.4
NBCI Gene record:
TDRP (157695)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_175075.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000263818 CTTGTATGTAGCACGTATAAA pLKO_005 1186 3UTR 100% 15.000 21.000 N TDRP n/a
2 TRCN0000263817 AGCATCCGACGGCAGAGTAAA pLKO_005 758 CDS 100% 13.200 18.480 N TDRP n/a
3 TRCN0000282822 CAGGTTCAGGGAGCAAGTTTC pLKO_005 362 CDS 100% 10.800 15.120 N TDRP n/a
4 TRCN0000263819 AGGAACTAACTTACGATTAAA pLKO_005 466 CDS 100% 15.000 10.500 N TDRP n/a
5 TRCN0000263820 AGAAGTGACTTCACTGTTTAA pLKO_005 394 CDS 100% 13.200 9.240 N TDRP n/a
6 TRCN0000166926 CAAGTCCAAAGGAACTAACTT pLKO.1 457 CDS 100% 5.625 3.938 N TDRP n/a
7 TRCN0000167433 GCAGGGATTGTACATTTGATT pLKO.1 998 3UTR 100% 5.625 3.938 N TDRP n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_175075.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.