Transcript: Mouse NM_175247.3

Mus musculus zinc finger protein 28 (Zfp28), mRNA.

Source:
NCBI, updated 2017-05-20
Taxon:
Mus musculus (mouse)
Gene:
Zfp28 (22690)
Length:
4161
CDS:
77..2554

Additional Resources:

NCBI RefSeq record:
NM_175247.3
NBCI Gene record:
Zfp28 (22690)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_175247.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000232346 AGTGACCACATAGGGCTTAAT pLKO_005 1490 CDS 100% 13.200 18.480 N ZFP28 n/a
2 TRCN0000085907 CCCTTATCTGTCATCGTAGAT pLKO.1 2175 CDS 100% 4.950 6.930 N Zfp28 n/a
3 TRCN0000085906 CGTCCCTTATCTGTCATCGTA pLKO.1 2172 CDS 100% 3.000 4.200 N Zfp28 n/a
4 TRCN0000420617 GTGGATCTCTTCTCCAAATTC pLKO_005 2501 CDS 100% 13.200 9.240 N Zfp28 n/a
5 TRCN0000418517 AGCACAGTGCCCGATTCATAC pLKO_005 2736 3UTR 100% 10.800 7.560 N Zfp28 n/a
6 TRCN0000085904 CCTCAAATCCAGTAGTTGTAA pLKO.1 1152 CDS 100% 5.625 3.938 N Zfp28 n/a
7 TRCN0000085905 GCTCACCATCAGCAGATTCAT pLKO.1 2432 CDS 100% 5.625 3.938 N Zfp28 n/a
8 TRCN0000085903 GCTGAACTGTATCATGGCTTT pLKO.1 3042 3UTR 100% 4.050 2.835 N Zfp28 n/a
9 TRCN0000234230 ACTGGAGAGAAGCCCTATAAA pLKO_005 1274 CDS 100% 15.000 7.500 Y EG666702 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_175247.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.