Transcript: Mouse NM_175417.4

Mus musculus androgen dependent TFPI regulating protein (Adtrp), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-05-20
Taxon:
Mus musculus (mouse)
Gene:
Adtrp (109254)
Length:
2440
CDS:
42..830

Additional Resources:

NCBI RefSeq record:
NM_175417.4
NBCI Gene record:
Adtrp (109254)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_175417.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000125801 CGCAATGCATACCTCCATATT pLKO.1 521 CDS 100% 13.200 18.480 N Adtrp n/a
2 TRCN0000125800 CCCACTGGGTATTATCATCTT pLKO.1 704 CDS 100% 4.950 6.930 N Adtrp n/a
3 TRCN0000421384 GGTATTCTGGACTCTCTTTCA pLKO_005 437 CDS 100% 4.950 3.465 N Adtrp n/a
4 TRCN0000125802 TGCCATAGCAAAGCCACAGAT pLKO.1 797 CDS 100% 4.950 3.465 N Adtrp n/a
5 TRCN0000125803 CATCCCACAGATTGGAAGGAA pLKO.1 206 CDS 100% 3.000 2.100 N Adtrp n/a
6 TRCN0000435313 ATCGGAAGGAAAGACATCAAG pLKO_005 348 CDS 100% 4.950 2.970 N Adtrp n/a
7 TRCN0000125799 GCAGAGTAAGACCCTGTCATT pLKO.1 1317 3UTR 100% 4.950 2.970 N Adtrp n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_175417.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.