Transcript: Mouse NM_177385.4

Mus musculus centlein, centrosomal protein (Cntln), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-04-23
Taxon:
Mus musculus (mouse)
Gene:
Cntln (338349)
Length:
2441
CDS:
157..1113

Additional Resources:

NCBI RefSeq record:
NM_177385.4
NBCI Gene record:
Cntln (338349)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_177385.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000250643 TTCTTACAGCAGCCGAATATA pLKO_005 1048 CDS 100% 15.000 21.000 N Cntln n/a
2 TRCN0000250646 GTAGGGACCAGCATTAATTTA pLKO_005 1110 CDS 100% 15.000 12.000 N Cntln n/a
3 TRCN0000250647 CAGTGTGGACACGAGAGTAAA pLKO_005 984 CDS 100% 13.200 10.560 N Cntln n/a
4 TRCN0000198191 CAGCAGCCGAATATAAGATTT pLKO.1 1054 CDS 100% 13.200 9.240 N Cntln n/a
5 TRCN0000250645 TGTATCTCTTGTATGAGTATT pLKO_005 1716 3UTR 100% 13.200 9.240 N Cntln n/a
6 TRCN0000250644 AGGCGTCTTCAGGCAACAAAC pLKO_005 547 CDS 100% 10.800 7.560 N Cntln n/a
7 TRCN0000177421 GCATGGTTCTATGATAATGTT pLKO.1 1408 3UTR 100% 5.625 3.938 N Cntln n/a
8 TRCN0000181921 CTGCTAAATGACCTGGAGAAA pLKO.1 925 CDS 100% 4.950 3.465 N Cntln n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_177385.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.