Transcript: Mouse NM_177667.4

Mus musculus tetratricopeptide repeat domain 22 (Ttc22), mRNA.

Source:
NCBI, updated 2017-05-13
Taxon:
Mus musculus (mouse)
Gene:
Ttc22 (230576)
Length:
2535
CDS:
103..1809

Additional Resources:

NCBI RefSeq record:
NM_177667.4
NBCI Gene record:
Ttc22 (230576)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_177667.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000248013 CCCTATGGGTGTCCATGAATA pLKO_005 900 CDS 100% 13.200 9.240 N Ttc22 n/a
2 TRCN0000248012 CCTCAGGACCTACCTAGATAT pLKO_005 1248 CDS 100% 13.200 9.240 N Ttc22 n/a
3 TRCN0000248014 GGATATTGTGAATGGGTATTT pLKO_005 2051 3UTR 100% 13.200 9.240 N Ttc22 n/a
4 TRCN0000248010 TCACCATGGCAACACTCTTTA pLKO_005 701 CDS 100% 13.200 9.240 N Ttc22 n/a
5 TRCN0000248011 ATGGTCAGCAGATCCCGATAG pLKO_005 659 CDS 100% 6.000 4.200 N Ttc22 n/a
6 TRCN0000191950 GTCTCAGAAGTAACTTTCTAT pLKO.1 2257 3UTR 100% 5.625 3.938 N Ttc22 n/a
7 TRCN0000200938 CTTCTCGATGAACTGGACTAT pLKO.1 142 CDS 100% 4.950 3.465 N Ttc22 n/a
8 TRCN0000189819 GTGTCCATGAATACGGGTACT pLKO.1 908 CDS 100% 4.050 2.835 N Ttc22 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_177667.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.