Transcript: Mouse NM_177672.4

Mus musculus transmembrane protein 201 (Tmem201), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-06-03
Taxon:
Mus musculus (mouse)
Gene:
Tmem201 (230917)
Length:
3645
CDS:
122..1300

Additional Resources:

NCBI RefSeq record:
NM_177672.4
NBCI Gene record:
Tmem201 (230917)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_177672.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000183392 GCTGACAATATGGTGTTAATT pLKO.1 2955 3UTR 100% 15.000 21.000 N Tmem201 n/a
2 TRCN0000184435 GCCGCTTGTCTGCTAACTTAA pLKO.1 2405 3UTR 100% 13.200 18.480 N Tmem201 n/a
3 TRCN0000179247 GAGCAGTACAATGGCTTTCAA pLKO.1 332 CDS 100% 5.625 3.938 N Tmem201 n/a
4 TRCN0000179512 GTGCCTTCTTGTTGTTCACTA pLKO.1 798 CDS 100% 4.950 3.465 N Tmem201 n/a
5 TRCN0000253680 ACCAGACCACCAAGATCAAGC pLKO_005 501 CDS 100% 4.050 2.835 N TMEM201 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_177672.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.