Transcript: Human NM_178332.2

Homo sapiens gonadotropin releasing hormone 2 (GNRH2), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-06-02
Taxon:
Homo sapiens (human)
Gene:
GNRH2 (2797)
Length:
401
CDS:
52..390

Additional Resources:

NCBI RefSeq record:
NM_178332.2
NBCI Gene record:
GNRH2 (2797)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_178332.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000242607 CCCAGTCCAGACTGCCCATGG pLKO_005 210 CDS 100% 0.000 0.000 N GNRH2 n/a
2 TRCN0000364829 GAAAGCGAGCCCTCAGCTCAG pLKO_005 152 CDS 100% 0.000 0.000 N GNRH2 n/a
3 TRCN0000242605 TGCCCATGGCCTCCCAAGTGA pLKO_005 222 CDS 100% 0.000 0.000 N GNRH2 n/a
4 TRCN0000378701 CTCAGCTCAGCCCAGGATCCC pLKO_005 163 CDS 100% 0.000 0.000 N GNRH2 n/a
5 TRCN0000364859 GCACTGGTCCCATGGCTGGTA pLKO_005 123 CDS 100% 0.000 0.000 N GNRH2 n/a
6 TRCN0000364860 TGCTGACTGCCCACCTTGGAC pLKO_005 89 CDS 100% 0.000 0.000 N GNRH2 n/a
7 TRCN0000242606 TGGACCCTCAGAGGCTCAGCA pLKO_005 105 CDS 100% 0.000 0.000 N GNRH2 n/a
8 TRCN0000378700 TGCTCCTGCTGCTGCTGACTG pLKO_005 77 CDS 100% 0.000 0.000 Y GNRH2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_178332.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.