Transcript: Human NM_178425.3

Homo sapiens histone deacetylase 9 (HDAC9), transcript variant 5, mRNA.

Source:
NCBI, updated 2019-09-03
Taxon:
Homo sapiens (human)
Gene:
HDAC9 (9734)
Length:
9619
CDS:
42..3251

Additional Resources:

NCBI RefSeq record:
NM_178425.3
NBCI Gene record:
HDAC9 (9734)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_178425.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000195059 CAAACTGCTTTCGAAATCTAT pLKO.1 1505 CDS 100% 5.625 7.875 N HDAC9 n/a
2 TRCN0000277762 CAAACTGCTTTCGAAATCTAT pLKO_005 1505 CDS 100% 5.625 7.875 N HDAC9 n/a
3 TRCN0000004856 CGCATTCTAATTCATGAAGAT pLKO.1 972 CDS 100% 4.950 6.930 N HDAC9 n/a
4 TRCN0000286037 CGCATTCTAATTCATGAAGAT pLKO_005 972 CDS 100% 4.950 6.930 N HDAC9 n/a
5 TRCN0000004855 CCATCCTACAAGTACACATTA pLKO.1 639 CDS 100% 13.200 9.240 N HDAC9 n/a
6 TRCN0000195675 CCAACTGGAAGTGTTACTGAA pLKO.1 894 CDS 100% 4.950 3.465 N HDAC9 n/a
7 TRCN0000004858 GCAAAGATAGAGGACGAGAAA pLKO.1 436 CDS 100% 4.950 3.465 N HDAC9 n/a
8 TRCN0000194057 GCAAAGATAGAGGACGAGAAA pLKO.1 436 CDS 100% 4.950 3.465 N Hdac9 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_178425.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.